Welcome to the Stowers Institute ImageJ Plugins Page.



This collection of plugins has been amassed over the years by Jay Unruh, a Research Advisor at Stowers.

I have recently made some major changes to my plugin distribution method. You can now install all of my plugins by downloading the Jay_Plugins.jar file and copying it into your ImageJ\plugins folder. You should make sure to delete all previously downloaded plugins (as always make a copy to protect yourself) and libraries (jalgs.jar, jguis.jar, and j3D.jar). Please see the ImageJ website for more details on obtaining, updating, and installing plugins for ImageJ.

Note that these plugins are intended for academic use only. Please see the license page for more details on terms of use. In addition, these plugins are provided on an as is basis with no garantees or support. A common problem with my plugins is that most are written for 32-bit images with support added later for 16 and then 8 bit images. If you get an error that says "[S cannot be cast to [F" or "[B cannot be cast to [F" then you need to convert to 32-bit with Image>Type>32-bit. If you would like to report bugs, send an e-mail to jru @ stowers . org. Nevertheless, I give no promise of response. Updates for the plugins will be uploaded periodically. The individual user is responsible for updating. I will make an effort to maintain backward compatibility, but there is no garantee of this, so a backup copy should always be made before updating.

Also note that this web page is a work in progress. I have tried to eliminate broken links, but it will take a while before the information content available here is fully up to date. The zipped documentation folder also contains word files with more complete documentation and references.