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Proteomics Links

Professional Organizations
American Society for Biochemistry and Molecular Biology
American Society for Mass Spectrometry
Association of Biomolecular Resource Facilities
Human Proteome Organization

Protein Interaction Databases
BioGRID - A Database of Genetic and Physical Interactions
DIP - Database of Interacting Proteins
IntAct - EMBL-EBI Protein Interaction
MINT - A Molecular Interactions Database
MIPS - Comprehensive Yeast Protein-Protein interactions
Yeast two-hybrid interactions
BRITE - Biomolecular Relations in Information Transmission and Expression
STRING - Known and Predicted Protein-Protein Interactions
Mouse Protein-Protein interactions
Human Protein Reference Database

Public Data Repositories
Proteome Commons (Tranche)
PRoteomics IDEntifications database (PRIDE)

Visualization Tools for Protein Interactions
Cytoscape
Pajek

Sequence Alignment
CLUSTALW - [At EBI, PBIL, My Hits or at EMBnet-CH]
KALIGN - An accurate and fast multiple sequence alignment algorithm [At Karolinska Institute or at EBI]
MAFFT - [At Kyushu University, EBI or at MyHits]
Muscle - [At Berkeley or at BioAssist]
T-Coffee - [At MyHits, BioAssist or at EBI]
MSA - at Genestream (IGH)
DIALIGN - Multiple sequence alignment based on segment-to-segment comparison, at University of Bielefeld, Germany
Match-Box - at University of Namur, Belgium - at Washington University
Multalin - [At GenoToul Bioinfo or at PBIL]
MUSCA - Multiple sequence alignment using pattern discovery, at IBM