Translation affects mRNA stability in a codon-dependent manner in human cells.

Wu Q, Medina SG, Kushawah G, DeVore ML, Castellano LA, Hand JM, Wright M, Bazzini AA. Elife. 2019 Apr 23;8. pii: e45396. doi: 10.7554/eLife.45396.


Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation.

Chan SH, Tang Y, Miao L, Darwich-Codore H, Vejnar CE, Beaudoin JD, Musaev D, Fernandez JP, Benitez MDJ, Bazzini AA, Moreno-Mateos MA, Giraldez AJ. Dev Cell. 2019 Jun 17;49(6):867-881.e8. doi: 10.1016/j.devcel.2019.05.037.


Poly(A) tails: longer is not always better.

Castellano LA, Bazzini AA. Nat Struct Mol Biol. 2017 Dec 7;24(12):1010-1011.


Systems to study codon effect on post-transcriptional regulation of gene expression

Wu Q, Bazzini AA. Methods. 2017 Nov 21; pii: S1046-2023(17)30272-4


When LIN41 Comes to a Fork in the Road, It Takes BOTH Paths: Translational Repression OR mRNA Decay, Depending on the Target Site Position

Hand JM1, Bazzini AA.  Mol Cell. 2017 Feb 2;65(3):375-377.


Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition

Bazzini AA, Del Viso F, Moreno-Mateos MA, Johnstone TG, Vejnar CE, Qin Y, Yao J, Khokha MK, Giraldez AJ. The EMBO Journal 2016;35:2087-2103.


Optimized CRISPR-Cas9 System for Genome Editing in Zebrafish

Vejnar CE, Moreno-Mateos MA, Cifuentes D, Bazzini AA, Giraldez AJ. Cold Spring Harb Protoc. 2016;2016:pdb prot086850.


Upstream ORFs are prevalent translational repressors in vertebrates

Johnstone TG, Bazzini AA, Giraldez AJ. The EMBO Journal. 2016;35:706-723.


Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

Bazzini AA, Johnstone TG, Christiano R, Mackowiak SD, Obermayer B, Fleming ES, Vejnar CE, Lee MT, Rajewsky N, Walther TC, Giraldez AJ. The EMBO Journal. 2014;33:981-993.


Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition

Lee MT, Bonneau AR, Takacs CM, Bazzini AA, DiVito KR, Fleming ES, Giraldez AJ. Nature. 2013;503:360-364.


Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

Bazzini AA, Lee MT, Giraldez AJ. Science. 2012;336:233-237.


MicroRNAs sculpt gene expression in embryonic development: new insights from plants

Bazzini AA, Giraldez AJ.  Developmental Cell. 2011;20:3-4.


Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development

Bazzini AA, Hopp HE, Beachy RN, Asurmendi S.  Proceedings of the National Academy of Sciences of the United States of America. 2007;104:12157-12162.