Stowers
Microscopy Center
Publications (Since 2010)

120. An Adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish. Loomis C, Peuss R, Jaggard JB, Wang Y, McKinney S, Raftopoulos A, Raftopoulos S, Whu D, Green MR, McGaugh SE, Rohner NE, Keene AC, Duboue ER. An Adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish. Front Neuroanat. 2019;13:88. Pubmed

119. Billmyre KK, Cahoon CK, Heenan GM, Wesley ER, Yu Z, Unruh JR, Takeo S, Hawley RS. X chromosome and autosomal recombination are differentially sensitive to disruptions in SC maintenance. Proc Natl Acad Sci U S A. 2019; pii: 201910840. Pubmed

118. Wang Y, Xu W, Maddera L, Tsuchiya D, Thomas N, Yu CR, Parmely T. Alkaline phosphatase-based chromogenic and fluorescence detection method for basescope™ In Situ hybridization.. J Histotechnol 2019;10.1080/01478885.2019.1620906. Pubmed

117. Arnold CP, Benham-Pyle BW, Lange JJ, Wood CJ, Sanchez Alvarado A. Wnt and TGFβ coordinate growth and patterning to regulate size-dependent behaviour.. Nature 2019;572:655. Pubmed

116. Nil Z, Millan RH, Gerbich T, Leal P, Yu Z, Saraf A, Sardiu M, Lange JJ, Yi K, Unruh J, Slaughter B, Si K. Amyloid-like Assembly Activates a Phosphatase in the Developing Drosophila Embryo.. Cell 2019;178:1403. Pubmed

115. Navajas Acedo J, Voas MG, Alexander R, Woolley T, Unruh JR, Li H, Moens C, Piotrowski T. PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation.. Nat Commun 2019;10:399. Pubmed

114. Potapova TA, Unruh JR, Yu Z, Rancati G, Li H, Stampfer MR, Gerton JL. Superresolution microscopy reveals linkages between ribosomal DNA on heterologous chromosomes.. J. Cell Biol. 2019;218:2492. Pubmed

113. Hughes SE, Hemenway E, Guo F, Yi K, Yu Z, Hawley RS. The E3 ubiquitin ligase Sina regulates the assembly and disassembly of the synaptonemal complex in Drosophila females. PLoS Genet. 2019;15:e1008161. Pubmed

112. Nakajima YI, Lee ZT, McKinney SA, Swanson SK, Florens L, Gibson MC. Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment. J Cell Biol. 2019 pii: jcb.201803116. Pubmed

111. Karabulut A, He S, Chen CY, McKinney SA, Gibson MC. Electroporation of short hairpin RNAs for rapid and efficient gene knockdown in the starlet sea anemone, Nematostella vectensis. Dev Biol. 2019;448:7. Pubmed

110. Paul P, Ramachandran S, Xia S, Unruh JR, Conkright-Fincham J, Li R. Dopamine receptor antagonists as potential therapeutic agents for ADPKD. PLoS One. 2019;14:e0216220. Pubmed

109. Dhatchinamoorthy K, Unruh JR, Lange JJ, Levy M, Slaughter BD, Gerton JL. The stoichiometry of the outer kinetochore is modulated by microtubule-proximal regulatory factors. J Cell Biol. 2019 jcb.201810070. Pubmed

108. Chen J, Gardner JM, Yu Z, Smith SE, McKinney S, Slaughter BD, Unruh JR, Jaspersen SL. Yeast centrosome components form a noncanonical LINC complex at the nuclear envelope insertion site. J Cell Biol. 2019;pii: jcb.201809045. Pubmed

107. Weems JC, Unruh JR, Slaughter BD, Conaway RC, Conaway JW. Imaging-based assays for investigating functions of the RNA polymerase II elongation factor Elongin and the Elongin ubiquitin ligase. Methods. 2019; pii: S1046-2023(18)30290-1. Pubmed

106. Smoyer CJ, Smith SE, Gardner JM, McCroskey S, Unruh JR, Jaspersen SL. Distribution of Proteins at the Inner Nuclear Membrane Is Regulated by the Asi1 E3 Ligase in Saccharomyces cerevisiae. Genetics. 2019;genetics.301911.2019. Pubmed

105. Zhao M, Tao F, Venkatraman A, Li Z, Smith SE, Unruh J, Chen S, Ward C, Qian P, Perry JM, Marshall H, Wang J, He XC, Li L. N-Cadherin-Expressing Bone and Marrow Stromal Progenitor Cells Maintain Reserve Hematopoietic Stem Cells. Cell Rep. 2019;26:652. Pubmed

104. Cheng LC, Tu KC, Seidel CW, Robb SMC, Guo F, Sanchez Alvarado A. Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea.. Dev. Biol. 2018;433:357. Pubmed

103. Agarwal M, Jin H, McClain M, Fan J, Koch BA, Jaspersen SL, Yu HG. The half-bridge component Kar1 promotes centrosome separation and duplication during budding yeast meiosis.. Mol. Biol. Cell 2018;29:1798. Pubmed

102. Barajas-Azpeleta R, Wu J, Gill J, Welte R, Seidel C, McKinney S, Dissel S, Si K. Antimicrobial peptides modulate long-term memory. PLoS Genet. 201814:e1007440. Pubmed

101. Bravo Nunez MA, Lange JJ, Zanders SE. A suppressor of a wtf poison-antidote meiotic driver acts via mimicry of the driver's antidote. PLoS Genet. 2018 14:e1007836. Pubmed

100. He S, Del Viso F, Chen CY, Ikmi A, Kroesen AE, Gibson MC. An axial Hox code controls tissue segmentation and body patterning in Nematostella vectensis. Science. 2018 361:1377. Pubmed

99. Li Z, Qian P, Shao W, Shi H, He XC, Gogol M, Yu Z, Wang Y, Qi M, Zhu Y, Perry JM, Zhang K, Tao F, Zhou K, Hu D, Han Y, Zhao C, Alexander R, Xu H, Chen S, Peak A, Hall K, Peterson M, Perera A, Haug JS, Parmely T, Li H, Shen B, Zeitlinger J, He C, Li L. Suppression of m(6)A reader Ythdf2 promotes hematopoietic stem cell expansion. Cell Res. 2018;28:904. Pubmed

98. Zeng A, Li H, Guo L, Gao X, McKinney S, Wang Y, Yu Z, Park J, Semerad C, Ross E, Cheng LC, Davies E, Lei K, Wang W, Perera A, Hall K, Peak A, Box A, Sanchez Alvarado A. Prospectively Isolated Tetraspanin(+) Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration. Cell. 2018;173:1593. Pubmed

97. Guo L, Accorsi A, He S, Guerrero-Hernandez C, Sivagnanam S, McKinney S, Gibson M, Sanchez Alvarado A. An adaptable chromosome preparation methodology for use in invertebrate research organisms. BMC Biol. 2018;16:25. Pubmed

96. Unruh JR, Slaughter BD, Jaspersen SL. Functional Analysis of the Yeast LINC Complex Using Fluctuation Spectroscopy and Super-Resolution Imaging. Methods Mol Biol. 2018;1840:137. Pubmed

95. Wang Y, Yu Z, Cahoon CK, Parmely T, Thomas N, Unruh JR, Slaughter BD, Hawley RS. Combined expansion microscopy with structured illumination microscopy for analyzing protein complexes. Nat Protoc. 2018;13:1869. Pubmed

94. Slaughter BD and Hawley RS. The anatomy of a nucleus: As revealed by chromosome painting. PLoS Genet. 2018; 14:e1007445. Pubmed

93. Khan T, Kandola TS, Wu J, Venkatesan S, Ketter E, Lange JJ, Rodriguez Gama A, Box A, Unruh JR, Cook M, Halfmann R. Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. Mol Cell. 2018;71:155. Pubmed

92. Sing TL, Hung MP, Ohnuki S, Suzuki G, San Luis BJ, McClain M, Unruh JR, Yu Z, Ou J, Marshall-Sheppard J, Huh WK, Costanzo M, Boone C, Ohya Y, Jaspersen SL, Brown GW. The budding yeast RSC complex maintains ploidy by promoting spindle pole body insertion. J Cell Biol. 2018;217:2445. Pubmed

91. Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. Integrative structure and functional anatomy of a nuclear pore complex. Nature. 2018; 555(7697):475-482. Pubmed

90. Beacham GM, Partlow EA, Lange JJ, Hollopeter G. NECAPs are negative regulators of the AP2 clathrin adaptor complex. Elife. 2018;7:e32242. Pubmed

89. McDonald NA, Lind AL, Smith SE, Li R, Gould KL. Nanoscale architecture of the Schizosaccharomyces pombe contractile ring. Elife. 2017;6:e28865. Pubmed

88. Mulla WA, Seidel CW, Zhu J, Tsai HJ, Smith SE, Singh P, Bradford WD, McCroskey S, Nelliat AR, Conkright J, Peak A, Malanowski KE, Perera AG, Li R. Aneuploidy as a cause of impaired chromatin silencing and mating-type specification in budding yeast. Elife. 2017;6:e27991. Pubmed

87. Li X, Seidel CW, Szerszen LT, Lange JJ, Workman JL, Abmayr SM. Enzymatic modules of the SAGA chromatin-modifying complex play distinct roles in Drosophila gene expression and development. Genes Dev. 2017;31:1588. Pubmed

86. Nuckolls NL, Bravo Nunez MA, Eickbush MT, Young JM, Lange JJ, Yu JS, Smith GR, Jaspersen SL, Malik HS, Zanders SE. wtf genes are prolific dual poison-antidote meiotic drivers. Elife. 2017;6:e26033. Pubmed

85. Dhatchinamoorthy K, Shivaraju M, Lange JJ, Rubinstein B, Unruh JR, Slaughter BD, Gerton JL. Structural plasticity of the living kinetochore. J Cell Biol. 2017; 216(11):3551-3570. Pubmed

84. De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R. HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets. Genome Res. 2017;27(9):1501-1512. Pubmed

83. Cahoon CK, Yu Z, Wang Y, Guo F, Unruh JR, Slaughter BD, Hawley RS. Superresolution expansion microscopy reveals the three-dimensional organization of the Drosophila synaptonemal complex. Proc Natl Acad Sci U S A. 2017;114(33):E6857-E6866. Pubmed

82. Xu B, Li H, Perry JM, Singh VP, Unruh J, Yu Z, Zakari M, McDowell W, Li L, Gerton JL. Ribosomal DNA copy number loss and sequence variation in cancer. PLoS Genet. 2017; 13(6):e1006771. Pubmed

81. Bestul AJ, Yu Z, Unruh JR, Jaspersen SL. Molecular model of fission yeast centrosome assembly determined by superresolution imaging. J Cell Biol. 2017;216(8):2409-2424. Pubmed

80. De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R. Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells. Proc Natl Acad Sci U S A. 2017;114(23):5838-5845. Pubmed

79. Davies EL, Lei K, Seidel CW, Kroesen AE, McKinney SA, Guo L, Robb SM, Ross EJ, Gotting K, Alvarado AS. Embryonic origin of adult stem cells required for tissue homeostasis and regeneration. Elife. 2017; doi: 10.7554/eLife.21052. Pubmed

78. Kozlovskaja-Gumbriene A, Yi R, Alexander R, Aman A, Jiskra R, Nagelberg D, Knaut H, McClain M, Piotrowski T. Proliferation-independent regulation of organ size by Fgf/Notch signaling. Elife. 2017; doi: 10.7554/eLife.21049. Pubmed

77. Ragkousi K, Marr K, McKinney S, Ellington L, Gibson MC. Cell-Cycle-Coupled Oscillations in Apical Polarity and Intercellular Contact Maintain Order in Embryonic Epithelia. Curr Biol. 2017; Epub. Pubmed

76. Weems JC, Slaughter BD, Unruh JR, Boeing S, Hall SM, McLaird MB, Yasukawa T, Aso T, Svejstrup JQ, Conaway JW, Conaway RC. Cockayne Syndrome B Protein Regulates Recruitment of the Elongin A Ubiquitin Ligase to Sites of DNA Damage. J Biol Chem. 2017; 292:6431. Pubmed

75. Wang PS, Chou FS, Ramachandran S, Xia S, Chen HY, Guo F, Suraneni P, Maher BJ, Li R. Crucial roles of the Arp2/3 complex during mammalian corticogenesis.. Development 2016;143:2741. Pubmed

74. Yang H, Ni HM, Guo F, Ding Y, Shi YH, Lahiri P, Froehlich LF, Rülicke T, Smole C, Schmidt VC, Zatloukal K, Cui Y, Komatsu M, Fan J, Ding WX. Sequestosome 1/p62 Protein Is Associated with Autophagic Removal of Excess Hepatic Endoplasmic Reticulum in Mice.. J. Biol. Chem. 2016;291:18663. Pubmed

73. Qian P, He XC, Paulson A, Li Z, Tao F, Perry JM, Guo F, Zhao M, Zhi L, Venkatraman A, Haug JS, Parmely T, Li H, Dobrowsky RT, Ding WX, Kono T, Ferguson-Smith AC, Li L. The Dlk1-Gtl2 Locus Preserves LT-HSC Function by Inhibiting the PI3K-mTOR Pathway to Restrict Mitochondrial Metabolism.. Cell Stem Cell 2016;18:214. Pubmed

72. Newton AA, Schnittker RR, Yu Z, Munday SS, Baumann DP, Neaves WB, Baumann P. Widespread failure to complete meiosis does not impair fecundity in parthenogenetic whiptail lizards. Development. 2016;143:4486. Pubmed

71. Arnold CP, Merryman MS, Harris-Arnold A, McKinney SA, Seidel CW, Loethen S, Proctor KN, Guo L, Sanchez Alvarado A. Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38. eLife. 2016; doi: 16710.17554/eLife.16793. Pubmed

70. Gilmore JM, Sardiu ME, Groppe BD, Thornton JL, Liu X, Dayebgadoh G, Banks CA, Slaughter BD, Unruh JR, Workman JL, Florens L, Washburn MP. WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage.PLoS One. 2016 11:e0155492. Pubmed

69. Hervas R, Li L, Majumdar A, Fernandez-Ramirez Mdel C, Unruh JR, Slaughter BD, Galera-Prat A, Santana E, Suzuki M, Nagai Y, Bruix M, Casas-Tinto, Menendez M, Laurents DV, Si K, Carrion-Vazquez M. Molecular Basis of Orb2 Amyloidogenesis and Blockade of Memory Consolidation.PLoS Biol. 2016 14:e1002361. Pubmed

68. Lei K, Thi-Kim Vu H, Mohan RD, McKinney SA, Seidel CW, Alexander R, Gotting K, Workman JL, Sanchez Alvarado A. Egf Signaling Directs Neoblast Repopulation by Regulating Asymmetric Cell Division in Planarians. Dev Cell. 2016;38(4):413-29. Pubmed

67. Li L, Sanchez CP, Slaughter BD, Zhao Y, Khan MR, Unruh JR, Rubinstein B, Si K. A Putative Biochemical Engram of Long-Term Memory.Curr Biol. 2016 26:3134-3156. Pubmed

66. McGinnis JP, Jiang H, Agha MA, Sanchez CP, Lange J, Yu Z, Marion-Poll F, Si K. Immediate perception of a reward is distinct from the reward's long-term salience. Elife. 2016;doi: 10.7554/eLife.22283. Pubmed

65. Smoyer CJ, Katta SS, Gardner JM, Stoltz L, McCroskey S, Bradford WD, McClain M, Smith SE, Slaughter BD, Unruh JR, Jaspersen SL. Analysis of membrane proteins localizing to the inner nuclear envelope in living cells.J Cell Biol. 2016 215:575-590. Pubmed

64. Venero Galanternik M, Nikaido M, Yu Z, McKinney SA, Piotrowski T. Localized Gene Induction By Infrared-Mediated Heat Shock. Zebrafish. 2016;13:537-540. Pubmed

63. Guo F, Huang BQ. Immunogold labeling for electron microscopy: Strategy and problem solving. Plant Microtech. Prot. 2015; 225. Pubmed

62. Burns S, Avena JS, Unruh JR, Yu Z, Smith SE, Slaughter BD, Winey M, Jaspersen SL. Structured illumination with particle averaging reveals novel roles for yeast centrosome components during duplication. eLife. 2015;4. Pubmed

61. DeKumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R. Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells. Genome Res. 2015;25:1229-1243. Pubmed

60. Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Sec66-Dependent Regulation of Yeast Spindle Pole Body Duplication Thorugh Pom152. Genetics. 2015;201:1479-95. Pubmed

59. Khan MR, Li L, Perez-Sanchez C, Saraf A, Florens L, Slaughter BD, Unruh JR, Si K. Amyloidogenic Oligomerization Transforms Drosophila Orb2 from a Translation Repressor to an Activator. Cell. 2015 163:1468-83. Pubmed

58. Kim S, Ma L, Unruh J, McKinney S, Yu CR. Intracellular chloride concentration of the mouse vomeronasal neuron. BMC Neurosci. 2015;16:90. Pubmed

57. Lake CM, Nielsen RJ, Guo F, Unruh JR, Slaughter BD, Hawley RS. Vilya, a component of the recombination nodule, is required for meiotic double-strand break formation in Drosophila. eLife. 2015;4. Pubmed

56. Liang K, Woodfin AR, Slaughter BD, Unruh JR, Box AC, Rickels RA, Gao X, Haug JS, Jaspersen SL, Shilatifard A. Mitotic Transcriptional Activation: Clearance of Actively Engaged Pol II via Transcriptional Elongation Control in Mitosis. Mol Cell. 2015;60:435-45. Pubmed

55. Potapova TA, Unruh JR, Box AC, Bradford WD, Seidel CW, Slaughter BD, Sivagnanam S, Wu Y, Li R. Karyotyping human and mouse cells using probes from single-sorted chromosomes and open source software. Biotechniques. 2015 59:335-46. Pubmed

54. Romero-Carvajal A, Navajas Acedo J, Jiang L, Kozlovskaja-Gumbriene A, Alexander R, Li H, Piotrowski T. Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways. Dev Cell. 2015; 34:267-82. Pubmed

53. Thi-Kim Vu H, Rink JC, McKinney SA, McClain M, Lakshmanaperumal N, Alexander R, Sanchez Alvarado A. Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ. Elife. 2015;4. doi: 10.7554/eLife.07405. Pubmed

52. Tu KC, Cheng LC, T K Vu H, Lange JJ, McKinney SA, Seidel CW, Sanchez Alvarado A. Egr-5 is a post-mitotic regulator of planarian epidermal differentiation. Elife. 2015;4:e10501. Pubmed

51. Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC. Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses. J Biol Chem. 2015;290:15030-15041. Pubmed

50. Haralalka S, Shelton C, Cartwright HN, Guo F, Trimble R, Kumar RP, Abmayr SM. Live imaging provides new insights on dynamic F-actin filopodia and differential endocytosis during myoblast fusion in Drosophila.. PLoS ONE 2014;9:e11412. Pubmed

49. Ou, J, Guo, Z, Shi, J, Wang, X, Liu, J, Shi, B, Guo, F, Zhang, C, Yang, D. Transgenic rice endosperm as a bioreactor for molecular pharming. Plant Cell Rep.2014;4:585. Pubmed

48. Adler CE, Seidel CW, McKinney SA, Sanchez Alvarado A. Selective amputation of the pharynx identifies a FoxA-dependent regeneration program in planaria. Elife. 2014;3:e02238. Pubmed

47. Avena JS, Burns S, Yu Z, Ebmeier CC, Old WM, Jaspersen SL, Winey M. Licensing of yeast centrosome duplication requires phosphoregulation of sfi1. PLoS Genet. 2014;10:e1004666. Pubmed

46. Chen J, Smoyer CJ, Slaughter BD, Unruh JR, Jaspersen SL. The SUN protein Mps3 controls Ndc1 distribution and function on the nuclear membrane. J Cell Biol. 2014;204:523-539. Pubmed

45. Collins KA, Unruh JR, Slaughter BD, Yu Z, Lake CM, Nielsen RJ, Box KS, Miller DE, Blumenstiel JP, Perera AG, Malanowski KE, Hawley RS. Corolla is a novel protein that contributes to the architecture of the synaptonemal complex of Drosophila. Genetics. 2014;198:219-228. Pubmed

44. Harris B, Bose T, Lee KK, Wang F, Lu S, Ross RT, Zhang Y, French SL, Beyer AL, Slaughter BD, Unruh JR, Gerton JL. Cohesion promotes nucleolar structure and function. Mol Biol Cell. 2014;25:337-346. Pubmed

43. Hollopeter G, Lange JJ, Zhang Y, Vu TN, Gu M, Ailion M, Lambie EJ, Slaughter BD, Unruh JR, Florens L, Jorgensen EM. The membrane-associated proteins FCHo and SGIP are allosteric activators of the AP2 clathrin adaptor complex. eLife. 2014;3:e03648. Pubmed

42. Ikmi A, McKinney SA, Delventhal KM, Gibson MC. TALEN and CRISPR/Cas9-mediated genome editing in the early-branching metazoan Nematostella vectensis. Nat Commun. 2014;5:5486. Pubmed

41. Smith SE, Slaughter BD, Unruh JR. Imaging methodologies for systems biology. Cell Adh & Migr. 2014;8:468-477. Pubmed

40. Zhou C, Slaughter BD, Unruh JR, Guo F, Yu Z, Mickey K, Narkar A, Ross RT, McClain M, Li R. Organelle-based aggregation and retention of damaged proteins in asymmetrically dividing cells. Cell. 2014;159:530-542. Pubmed

39. Lin C, Garruss AS, Luo Z, Guo F, Shilatifard A. The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.. Cell 2013;152:144. Pubmed

38. Chen S, Li H, Gaudenz K, Paulson A, Guo F, Trimble R, Peak A, Seidel C, Deng C, Furuta Y, Xie T. Defective FGF signaling causes coloboma formation and disrupts retinal neurogenesis.. Cell Res. 2013;23:254. Pubmed

37. Wang F, Scoville D, He XC, Mahe MM, Box A, Perry JM, Smith NR, Lei NY, Davies PS, Fuller MK, Haug JS, McClain M, Gracz AD, Ding S, Stelzner M, Dunn JC, Magness ST, Wong MH, Martin MG, Helmrath M, Li L. Isolation and characterization of intestinal stem cells based on surface marker combinations and colony-formation assay.. Gastroenterology 2013;145:383. Pubmed

36. Bonner AM, Hughes SE, Chisholm JA, Smith SK, Slaughter BD, Unruh JR, Collins KA, Friederichs JM, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, Hawley RS. Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains. PNAS. 2013;110:E1222-1231. Pubmed

35. Lange JJ, Wood CJ, Marshall WA, Maddera LE, Yu QE, Bradford WD, Slaughter BR, Unruh JR, Wiegraebe W. Correction of bleaching artifacts in high content fluorescence correlation spectroscopy (HCS-FCS) data. Proceedings SPIE. 2013;859006. doi:10.1117/12.2005205.

34. Nakajima Y, Meyer EJ, Kroesen A, McKinney SA, Gibson MC. Epithelial junctions maintain tissue architecture by directing planar spindle orientation. Nature. 2013;500:359-62. Pubmed

33. Slaughter BD, Unruh JR, Das A, Smith SE, Rubinstein B, Li R. Non-uniform membrane diffusion enables steady-state cell polarization via vesicular trafficking. Nat Commun. 2013;4:1380. Pubmed

32. Smith SE, Rubinstein B, Mendes Pinto I, Slaughter BD, Unruh JR, Li R. Independence of symmetry breaking on Bem1-mediated autocatalytic activation of Cdc42. J Cell Biol. 2013;202:1091-1106. Pubmed

31. Unruh JR, Slaughter BD, Li R. Quality Control: Putting Protein Aggregates in a Bind. Curr Biol. 2013;23:R74-R76. Pubmed

30. Xu XP, Slaughter BD, Volkmann N. Probabilistic determination of probe locations from distance data. J. Struct Biol. 2013;184:75. Pubmed

29. Yi K, Rubinstein B, Unruh JR, Guo F, Slaughter BD, Li R. Sequential actin-based pushing forces drive meiosis I chromosome migration and symmetry breaking in oocytes. J Cell Biol. 2013;200:567-576. Pubmed

28. Ding WX, Guo F, Ni HM, Bockus A, Manley S, Stolz DB, Eskelinen EL, Jaeschke H, Yin XM. Parkin and mitofusins reciprocally regulate mitophagy and mitochondrial spheroid formation. J Biol Chem. 2012;287:42379. Pubmed

27. Ding WX, Li M, Biazik JM, Morgan DG, Guo F, Ni HM, Goheen M, Eskelinen EL, Yin XM. Electron microscopic analysis of a spherical mitochondrial structure. J Biol Chem. 2012;287:42373. Pubmed

26. Bose T, Lee KK, Lu S, Xu B, Harris B, Slaughter B, Unruh J, Garrett A, McDowell W, Box A, Li H, Peak A, Ramachandran S, Seidel C, Gerton JL. Cohesin proteins promote ribosomal RNA production and protein translation in yeast and human cells. PLoS Genet. 2012;8:e1002749. Pubmed

25. Das A, Slaughter BD, Unruh JR, Bradford WD, Alexander R, Rubinstein B, Li R. Flippase-mediated phospholipid asymmetry promotes fast Cdc42 recycling in dynamic maintenance of cell polarity. Nat Cell Biol. 2012;14:304-310. Pubmed

24. Friederichs JM, Gardner JM, Smoyer CJ, Whetstine CR, Gogol M, Slaughter BD, Jaspersen SL. Genetic analysis of Mps3 SUN domain mutants in Saccharomyces cerevisiae reveals an interaction with the SUN-like protein Slp1. G3 (Bethesda). 2012;2(12):1703-18. Pubmed

23. Ghosh S, Gardner JM, Smoyer CJ, Friederichs JM, Unruh JR, Slaughter BD, Alexander R, Chisholm RD, Lee KK, Workman JL, Jaspersen SL. Acetylation of the SUN protein Mps3 by Eco1 regulates its function in nuclear organization. Mol Biol Cell. 2012;23:2546-2559. Pubmed

22. Ma L, Qiu Q, Gradwohl S, Scott A, Yu EQ, Alexander R, Wiegraebe W, Yu CR. Distributed representation of chemical features and tunotopic organization of glomeruli in the mouse olfactory bulb. Proc Natl Acad Sci U S A. 2012;109:5481-6. Pubmed

21. Majumdar A, Cesario WC, White-Grindley E, Jiang H, Ren F, Khan MR, Li L, Choi EM, Kannan K, Guo F, Unruh J, Slaughter B, Si K. Critical Role of Amyloid-like Oligomers of Drosophila Orb2 in the Persistence of Memory. Cell. 2012;148:515-529. Pubmed

20. Mendes Pinto I, Rubinstein B, Kucharavy A, Unruh J, Li R. Actin Depolymerization Drives Actomyosin Ring Contraction during Budding Yeast Cytokinesis. Dev Cell. 2012;22:1247-1260. Pubmed

19. Rubinstein B, Slaughter BD, Li R. Weakly nonlinear analysis of symmetry breaking in cell polarity models. Phys Biol. 2012;9(4):045006. Pubmed

18. Shivaraju M, Unruh JR, Slaughter BD, Mattingly M, Berman J, Gerton JL. Cell-cycle-coupled structural oscillation of centromeric nucleosomes in yeast. Cell. 2012;150:304-316. Pubmed

17. Suraneni P, Rubinstein B, Unruh JR, Durnin M, Hanein D, Li R. The Arp2/3 complex is required for lamellipodia extension and directional fibroblast cell migration. J Cell Biol. 2012;197:239-251. Pubmed

16. Xu N, Zhang SO, Cole RA, McKinney SA, Guo F, Haas JT, Bobba S, Farese RV Jr, Mak HY. The FATP1-DGAT2 complex facilitates lipid droplet expansion at the ER-lipid droplet interface. J Cell Biol. 2012;198:895-911. Pubmed

15. Xu XP, Rouiller I, Slaughter BD, Egile C, Kim E, Unruh JR, Fan X, Pollard TD, Li R, Hanein D, Volkmann N. Three-dimensional reconstructions of Arp2/3 complex with bound nucleation promoting factors. EMBO J. 2012;31:236-247. Pubmed

14. Ho CM, Hotta T, Guo F, Roberson RW, Lee YR, Liu B. Interaction of antiparallel microtubules in the phragmoplast is mediated by the microtubule-associated protein MAP65-3 in Arabidopsis. Plant Cell. 2011;23:2909. Pubmed

13. Friederichs JM, Ghosh S, Smoyer CJ, McCroskey S, Miller BD, Weaver KJ, Delventhal KM, Unruh J, Slaughter BD, Jaspersen SL. The SUN Protein Mps3 Is Required for Spindle Pole Body Insertion into the Nuclear Membrane and Nuclear Envelope Homeostasis. PLoS Genet. 2011;7:e1002365. Pubmed

12. Gardner JM, Smoyer CJ, Stensrud ES, Alexander R, Gogol M, Wiegraebe W, Jaspersen SL. Targeting of the SUN protein Mps3 to the inner nuclear membrane by the histone variant H2A.Z. J Cell Biol. 2011;193:489-507. Pubmed

11. Hughes SE, Beeler JS, Seat A, Slaughter BD, Unruh JR, Bauerly E, Matthies HJ, Hawley RS. Gamma-Tubulin Is Required for Bipolar Spindle Assembly and for Proper Kinetochore Microtubule Attachments during Prometaphase I in Drosophila Oocytes. PLoS Genet. 2011;7:e1002209. Pubmed

10. Parrish M, Unruh J, Krumlauf R. BAC modification through serial or simultaneous use of CRE/Lox technology. J Biomed Biotechnol. 2011;2011:924068. Pubmed

9. Slaughter BD, Unruh JR, Li R. Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast. Methods Mol Biol. 2011;759:283-306. Pubmed

8. Wood C, Huff J, Marshall W, Yu EQ, Unruh J, Slaughter B, Wiegraebe W. Fluorescence correlation spectroscopy as tool for high-content-screening in yeast (HCS-FCS). Proceedings of the SPIE. 2011;7905, 79050H.

7. Yi K, Unruh JR, Deng M, Slaughter BD, Rubinstein B, Li R. Dynamic maintenance of asymmetric meiotic spindle position through Arp2/3-complex-driven cytoplasmic streaming in mouse oocytes. Nat Cell Biol. 2011;13:1252-1258. Pubmed

6. Zhou C, Slaughter BD, Unruh JR, Eldakak A, Rubinstein B, Li R. Motility and segregation of hsp104-associated protein aggregates in budding yeast. Cell. 2011;147:1186-1196. Pubmed

5. Zhang SO, Trimble R, Guo F, Mak HY. Lipid droplets as ubiquitous fat storage organelles in C. elegans.. BMC Cell Biol. 2010;11:9. Pubmed

4. Zhang SO, Box AC, Xu N, Le Men J, Yu J, Guo F, Trimble R, Mak HY. Genetic and dietary regulation of lipid droplet expansion in Caenorhabditis elegans.. Proc. Natl. Acad. Sci. U.S.A. 2010;107:4640. Pubmed

3. He J, Ma L, Kim S, Schwartz J, Santilli M, Wood C, Durnin MH, Yu CR. Distinct signals conveyed by pheromone concentrations to the mouse vomeronasal organ. J Neurosci. 2010; 30:7473-83. Pubmed

2. Kuczera, K.; Unruh, J. R.; Johnson, C. K.; Jas G. S. Reorientations of Aromatic Amino Acids and Their Side Chain Models: Anisotropy Measurements and Molecular Dynamics Simulations. J. Phys. Chem. A. 2010. 114:133. Pubmed

1. Kulesa PM, Teddy JM, Smith M, Alexander R, Cooper CH, Lansford R, McLennan R. Multispectral fingerprinting for improved in vivo cell dynamics analysis. BMC Dev Biol. 2010;10:101. Pubmed